Main

UML diagrams presenting the flow of the analysis for each module are available here: https://github.com/ANCPLabOldenburg/MEG-QC-code/tree/main/diagrams

meg_qc.calculation.meg_qc_pipeline.make_derivative_meg_qc(config_file_path, internal_config_file_path)[source]

Main function of MEG QC:

  • Parse parameters from config

  • Get the data .fif file for each subject using ancpbids

  • Run initial processing (filtering, epoching, resampling)

  • Run whole QC analysis for every subject, every fif

  • Save derivatives (csvs, html reports) into the file system using ancpbids.

Parameters:

  • config_file_path (str) – Path the config file with all the parameters for the QC analysis and data directory path.

  • internal_config_file_path (str) – Path the config file with all the parameters for the QC analysis preset - not to be changed by the user.

Returns:

raw – The raw MEG data.

Return type:

mne.io.Raw