Index

_

__init__() (meg_qc.calculation.metrics.ECG_EOG_meg_qc.Avg_artif method)

__repr__() (meg_qc.calculation.metrics.ECG_EOG_meg_qc.Avg_artif method) (meg_qc.plotting.meg_qc_plots.Deriv_to_plot method)

A

add_3d_ch_locations() (in module meg_qc.calculation.initial_meg_qc) add_ecg_info() (meg_qc.calculation.objects.MEG_channel method) add_eog_info() (meg_qc.calculation.objects.MEG_channel method) add_log_buttons() (in module meg_qc.calculation.metrics.PSD_meg_qc) (in module meg_qc.plotting.universal_plots) add_raw_to_config_json() (in module meg_qc.calculation.meg_qc_pipeline) align_artif_data() (in module meg_qc.calculation.metrics.ECG_EOG_meg_qc) align_mean_rwave() (in module meg_qc.calculation.metrics.ECG_EOG_meg_qc) amplitude_ratio (meg_qc.calculation.metrics.ECG_EOG_meg_qc.Avg_artif attribute) artif_data (meg_qc.calculation.metrics.ECG_EOG_meg_qc.Avg_artif attribute)

artif_data_smoothed (meg_qc.calculation.metrics.ECG_EOG_meg_qc.Avg_artif attribute) artif_over_threshold (meg_qc.calculation.metrics.ECG_EOG_meg_qc.Avg_artif attribute) artif_over_threshold_smoothed (meg_qc.calculation.metrics.ECG_EOG_meg_qc.Avg_artif attribute) ask_user_rerun_subs() (in module meg_qc.calculation.meg_qc_pipeline) assign_channels_properties() (in module meg_qc.calculation.initial_meg_qc) assign_epoched_std_ptp_to_channels() (in module meg_qc.plotting.universal_plots) assign_lobe_to_artifacts() (in module meg_qc.calculation.metrics.ECG_EOG_meg_qc) assign_psds_to_channels() (in module meg_qc.calculation.metrics.PSD_meg_qc) attach_dummy_data() (in module meg_qc.calculation.metrics.muscle_meg_qc) Avg_artif (class in meg_qc.calculation.metrics.ECG_EOG_meg_qc)

B

boxplot_all_time_csv() (in module meg_qc.plotting.universal_plots) boxplot_epoched_xaxis_channels_csv() (in module meg_qc.plotting.universal_plots)

boxplot_epoched_xaxis_epochs_csv() (in module meg_qc.plotting.universal_plots) boxplot_epochs() (in module meg_qc.plotting.universal_plots)

C

calculate_artifacts_on_channels() (in module meg_qc.calculation.metrics.ECG_EOG_meg_qc) calculate_muscle_NO_threshold() (in module meg_qc.calculation.metrics.muscle_meg_qc) change_ch_type_CTF() (in module meg_qc.calculation.initial_meg_qc) check_3_conditions() (in module meg_qc.calculation.metrics.ECG_EOG_meg_qc) check_chosen_ch_types() (in module meg_qc.calculation.initial_meg_qc) check_config_saved_ask_user() (in module meg_qc.calculation.meg_qc_pipeline) check_ds_paths() (in module meg_qc.calculation.meg_qc_pipeline) check_mean_wave() (in module meg_qc.calculation.metrics.ECG_EOG_meg_qc) check_sub_list() (in module meg_qc.calculation.meg_qc_pipeline) choose_channels() (in module meg_qc.calculation.initial_meg_qc) chs_dict_to_csv() (in module meg_qc.calculation.initial_meg_qc)

color (meg_qc.calculation.metrics.ECG_EOG_meg_qc.Avg_artif attribute) combine_howto_sensors_and_metric() (in module meg_qc.plotting.universal_html_report) compute_head_pos_std_and_max_rotation_movement() (in module meg_qc.calculation.metrics.Head_meg_qc) content (meg_qc.calculation.objects.QC_derivative attribute) content_type (meg_qc.calculation.objects.QC_derivative attribute) convert_fig_to_html() (meg_qc.calculation.objects.QC_derivative method) convert_fig_to_html_add_description() (meg_qc.calculation.objects.QC_derivative method) corr_coef (meg_qc.calculation.metrics.ECG_EOG_meg_qc.Avg_artif attribute) create_categories_for_selector() (in module meg_qc.plotting.meg_qc_plots) create_config_artifact() (in module meg_qc.calculation.meg_qc_pipeline) csv_to_html_report() (in module meg_qc.plotting.meg_qc_plots) cut_the_noise_from_psd() (in module meg_qc.calculation.metrics.PSD_meg_qc)

D

deriv_entity_obj (meg_qc.plotting.meg_qc_plots.Deriv_to_plot attribute) Deriv_to_plot (class in meg_qc.plotting.meg_qc_plots) description_for_user (meg_qc.calculation.objects.QC_derivative attribute)

detect_artif_above_threshold() (meg_qc.calculation.metrics.ECG_EOG_meg_qc.Avg_artif method) detect_artif_above_threshold_smoothed() (meg_qc.calculation.metrics.ECG_EOG_meg_qc.Avg_artif method) detect_channels_above_norm() (in module meg_qc.calculation.metrics.ECG_EOG_meg_qc) detect_noisy_ecg() (in module meg_qc.calculation.metrics.ECG_EOG_meg_qc)

E

ECG_meg_qc() (in module meg_qc.calculation.metrics.ECG_EOG_meg_qc) edit_legend_pie_SNR() (in module meg_qc.plotting.universal_plots) EOG_meg_qc() (in module meg_qc.calculation.metrics.ECG_EOG_meg_qc)

Epoch_meg() (in module meg_qc.calculation.initial_meg_qc) estimate_t0() (in module meg_qc.calculation.metrics.ECG_EOG_meg_qc) extract_raw_entities_from_obj() (in module meg_qc.plotting.meg_qc_plots)

F

figure_x_axis() (in module meg_qc.plotting.universal_plots) filter_noise_before_muscle_detection() (in module meg_qc.calculation.metrics.muscle_meg_qc) find_affected_by_amplitude_ratio() (in module meg_qc.calculation.metrics.ECG_EOG_meg_qc) find_affected_by_correlation() (in module meg_qc.calculation.metrics.ECG_EOG_meg_qc) find_affected_by_similarity_score() (in module meg_qc.calculation.metrics.ECG_EOG_meg_qc) find_affected_over_mean() (in module meg_qc.calculation.metrics.ECG_EOG_meg_qc) find_epoch_peaks() (in module meg_qc.calculation.metrics.ECG_EOG_meg_qc) find_mean_rwave_blink() (in module meg_qc.calculation.metrics.ECG_EOG_meg_qc) find_noisy_freq_bands_complex() (in module meg_qc.calculation.metrics.PSD_meg_qc)

find_noisy_freq_bands_simple() (in module meg_qc.calculation.metrics.PSD_meg_qc) find_number_and_ampl_of_noise_freqs() (in module meg_qc.calculation.metrics.PSD_meg_qc) find_powerline_noise_short() (in module meg_qc.calculation.metrics.muscle_meg_qc) find_raw_entity_name() (meg_qc.plotting.meg_qc_plots.Deriv_to_plot method), [1] find_t0_channels() (in module meg_qc.calculation.metrics.ECG_EOG_meg_qc) find_t0_highest() (in module meg_qc.calculation.metrics.ECG_EOG_meg_qc) find_t0_mean() (in module meg_qc.calculation.metrics.ECG_EOG_meg_qc) flip_artif() (meg_qc.calculation.metrics.ECG_EOG_meg_qc.Avg_artif method) flip_artif_smoothed() (meg_qc.calculation.metrics.ECG_EOG_meg_qc.Avg_artif method) flip_channels() (in module meg_qc.calculation.metrics.ECG_EOG_meg_qc)

G

get_all_config_params() (in module meg_qc.calculation.initial_meg_qc) get_ampl_of_brain_waves() (in module meg_qc.calculation.metrics.PSD_meg_qc) get_ampl_of_noisy_freqs() (in module meg_qc.calculation.metrics.PSD_meg_qc) get_amplitude_annots_per_channel() (in module meg_qc.calculation.metrics.Peaks_auto_meg_qc) get_bands_amplitude_per_ch() (in module meg_qc.calculation.metrics.PSD_meg_qc) get_big_small_std_ptp_all_data() (in module meg_qc.calculation.metrics.STD_meg_qc) get_ds_entities() (in module meg_qc.plotting.meg_qc_plots) get_ECG_data_choose_method() (in module meg_qc.calculation.metrics.ECG_EOG_meg_qc) get_EOG_data() (in module meg_qc.calculation.metrics.ECG_EOG_meg_qc) get_files_list() (in module meg_qc.calculation.meg_qc_pipeline) get_head_positions() (in module meg_qc.calculation.metrics.Head_meg_qc) get_highest_peak() (meg_qc.calculation.metrics.ECG_EOG_meg_qc.Avg_artif method)

get_highest_peak_smoothed() (meg_qc.calculation.metrics.ECG_EOG_meg_qc.Avg_artif method) get_internal_config_params() (in module meg_qc.calculation.initial_meg_qc) get_list_of_raws_for_config() (in module meg_qc.calculation.meg_qc_pipeline) get_meg_system() (in module meg_qc.plotting.universal_plots) get_nfft_nperseg() (in module meg_qc.calculation.metrics.PSD_meg_qc) get_noisy_flat_std_ptp_epochs() (in module meg_qc.calculation.metrics.STD_meg_qc) get_peaks_wave() (meg_qc.calculation.metrics.ECG_EOG_meg_qc.Avg_artif method) get_peaks_wave_smoothed() (meg_qc.calculation.metrics.ECG_EOG_meg_qc.Avg_artif method) get_ptp_all_data() (in module meg_qc.calculation.metrics.Peaks_manual_meg_qc) get_ptp_epochs() (in module meg_qc.calculation.metrics.Peaks_manual_meg_qc) get_std_all_data() (in module meg_qc.calculation.metrics.STD_meg_qc) get_std_epochs() (in module meg_qc.calculation.metrics.STD_meg_qc) get_tit_and_unit() (in module meg_qc.plotting.universal_plots)

H

HEAD_movement_meg_qc() (in module meg_qc.calculation.metrics.Head_meg_qc)

head_pos_to_csv() (in module meg_qc.calculation.metrics.Head_meg_qc)

I

initial_processing() (in module meg_qc.calculation.initial_meg_qc)

K

keep_fig_derivs() (in module meg_qc.plotting.universal_html_report)

keep_unique_locs() (in module meg_qc.plotting.universal_plots)

L

load_data() (in module meg_qc.calculation.initial_meg_qc)

lobe (meg_qc.calculation.metrics.ECG_EOG_meg_qc.Avg_artif attribute)

M

main_peak_loc (meg_qc.calculation.metrics.ECG_EOG_meg_qc.Avg_artif attribute) main_peak_loc_smoothed (meg_qc.calculation.metrics.ECG_EOG_meg_qc.Avg_artif attribute) main_peak_magnitude (meg_qc.calculation.metrics.ECG_EOG_meg_qc.Avg_artif attribute) main_peak_magnitude_smoothed (meg_qc.calculation.metrics.ECG_EOG_meg_qc.Avg_artif attribute) make_3d_sensors_trace() (in module meg_qc.plotting.universal_plots) make_derivative_meg_qc() (in module meg_qc.calculation.meg_qc_pipeline) make_dict_global_ECG_EOG() (in module meg_qc.calculation.metrics.ECG_EOG_meg_qc) make_dict_global_psd() (in module meg_qc.calculation.metrics.PSD_meg_qc) make_dict_global_std_ptp() (in module meg_qc.calculation.metrics.STD_meg_qc) make_dict_local_psd() (in module meg_qc.calculation.metrics.PSD_meg_qc) make_dict_local_std_ptp() (in module meg_qc.calculation.metrics.STD_meg_qc) make_head_annots_plot() (in module meg_qc.plotting.universal_plots) make_head_pos_plot_mne() (in module meg_qc.plotting.universal_plots) make_howto_use_plots_section() (in module meg_qc.plotting.universal_html_report) make_joined_report() (in module meg_qc.plotting.universal_html_report) make_joined_report_mne() (in module meg_qc.plotting.universal_html_report) make_metric_section() (in module meg_qc.plotting.universal_html_report) make_plots_meg_qc() (in module meg_qc.plotting.meg_qc_plots) make_sensor_figs_section() (in module meg_qc.plotting.universal_html_report) make_simple_metric_ECG_EOG() (in module meg_qc.calculation.metrics.ECG_EOG_meg_qc) make_simple_metric_head() (in module meg_qc.calculation.metrics.Head_meg_qc) make_simple_metric_muscle() (in module meg_qc.calculation.metrics.muscle_meg_qc) make_simple_metric_psd() (in module meg_qc.calculation.metrics.PSD_meg_qc) make_simple_metric_ptp_manual() (in module meg_qc.calculation.metrics.Peaks_manual_meg_qc) make_simple_metric_std() (in module meg_qc.calculation.metrics.STD_meg_qc) MEG_channel (class in meg_qc.calculation.objects) meg_qc.calculation.initial_meg_qc module meg_qc.calculation.meg_qc_pipeline module meg_qc.calculation.metrics.ECG_EOG_meg_qc module meg_qc.calculation.metrics.Head_meg_qc module

meg_qc.calculation.metrics.muscle_meg_qc module meg_qc.calculation.metrics.Peaks_auto_meg_qc module meg_qc.calculation.metrics.Peaks_manual_meg_qc module meg_qc.calculation.metrics.PSD_meg_qc module meg_qc.calculation.metrics.STD_meg_qc module meg_qc.calculation.objects module meg_qc.plotting.meg_qc_plots module meg_qc.plotting.universal_html_report module meg_qc.plotting.universal_plots module metric (meg_qc.plotting.meg_qc_plots.Deriv_to_plot attribute) minmax_amplitude() (in module meg_qc.calculation.metrics.ECG_EOG_meg_qc) module meg_qc.calculation.initial_meg_qc meg_qc.calculation.meg_qc_pipeline meg_qc.calculation.metrics.ECG_EOG_meg_qc meg_qc.calculation.metrics.Head_meg_qc meg_qc.calculation.metrics.muscle_meg_qc meg_qc.calculation.metrics.Peaks_auto_meg_qc meg_qc.calculation.metrics.Peaks_manual_meg_qc meg_qc.calculation.metrics.PSD_meg_qc meg_qc.calculation.metrics.STD_meg_qc meg_qc.calculation.objects meg_qc.plotting.meg_qc_plots meg_qc.plotting.universal_html_report meg_qc.plotting.universal_plots MUSCLE_meg_qc() (in module meg_qc.calculation.metrics.muscle_meg_qc)

N

name (meg_qc.calculation.metrics.ECG_EOG_meg_qc.Avg_artif attribute) (meg_qc.calculation.objects.QC_derivative attribute)

neighbour_peak_amplitude() (in module meg_qc.calculation.metrics.Peaks_manual_meg_qc)

P

p_value (meg_qc.calculation.metrics.ECG_EOG_meg_qc.Avg_artif attribute) path (meg_qc.plotting.meg_qc_plots.Deriv_to_plot attribute) peak_loc (meg_qc.calculation.metrics.ECG_EOG_meg_qc.Avg_artif attribute) peak_loc_smoothed (meg_qc.calculation.metrics.ECG_EOG_meg_qc.Avg_artif attribute) peak_magnitude (meg_qc.calculation.metrics.ECG_EOG_meg_qc.Avg_artif attribute) peak_magnitude_smoothed (meg_qc.calculation.metrics.ECG_EOG_meg_qc.Avg_artif attribute) plot_3d_topomap_std_ptp_csv() (in module meg_qc.plotting.universal_plots) plot_affected_channels_csv() (in module meg_qc.plotting.universal_plots) plot_artif_per_ch_3_groups() (in module meg_qc.plotting.universal_plots) plot_ch_df_as_lines_by_lobe_csv() (in module meg_qc.plotting.universal_plots) plot_correlation_csv() (in module meg_qc.plotting.universal_plots) plot_ECG_EOG_channel_csv() (in module meg_qc.plotting.universal_plots) plot_ecg_eog_mne() (in module meg_qc.plotting.universal_plots) plot_head_pos_csv() (in module meg_qc.plotting.universal_plots) plot_mean_rwave_csv() (in module meg_qc.plotting.universal_plots)

plot_mean_rwave_shifted() (in module meg_qc.plotting.universal_plots) plot_muscle_annotations_mne() (in module meg_qc.plotting.universal_plots) plot_muscle_csv() (in module meg_qc.plotting.universal_plots) plot_one_psd() (in module meg_qc.calculation.metrics.PSD_meg_qc) plot_pie_chart_freq_csv() (in module meg_qc.plotting.universal_plots) Plot_psd_csv() (in module meg_qc.plotting.universal_plots) plot_sensors_3d_csv() (in module meg_qc.plotting.universal_plots) plot_stim_csv() (in module meg_qc.plotting.universal_plots) plot_stim_csv_colored_leveled() (in module meg_qc.plotting.universal_plots) plot_stim_csv_simple() (in module meg_qc.plotting.universal_plots) plot_topomap_std_ptp_csv() (in module meg_qc.plotting.universal_plots) PP_auto_meg_qc() (in module meg_qc.calculation.metrics.Peaks_auto_meg_qc) PP_manual_meg_qc() (in module meg_qc.calculation.metrics.Peaks_manual_meg_qc) print_detailed_entities() (meg_qc.plotting.meg_qc_plots.Deriv_to_plot method), [1] PSD_meg_qc() (in module meg_qc.calculation.metrics.PSD_meg_qc)

Q

QC_derivative (class in meg_qc.calculation.objects)

R

raw_entity_name (meg_qc.plotting.meg_qc_plots.Deriv_to_plot attribute)

reconstruct_ecg_and_check() (in module meg_qc.calculation.metrics.ECG_EOG_meg_qc) rms_amplitude() (in module meg_qc.calculation.metrics.ECG_EOG_meg_qc)

S

save_muscle_to_csv() (in module meg_qc.calculation.metrics.muscle_meg_qc) select_subcategory() (in module meg_qc.plotting.meg_qc_plots) selector() (in module meg_qc.plotting.meg_qc_plots) shift_mean_wave() (in module meg_qc.calculation.metrics.ECG_EOG_meg_qc) similarity_score (meg_qc.calculation.metrics.ECG_EOG_meg_qc.Avg_artif attribute) simple_metric_basic() (in module meg_qc.plotting.universal_html_report) smooth_artif() (meg_qc.calculation.metrics.ECG_EOG_meg_qc.Avg_artif method) sort_channels_by_lobe() (in module meg_qc.calculation.initial_meg_qc)

sort_tsvs_by_raw() (in module meg_qc.plotting.meg_qc_plots) split_affected_into_3_groups_csv() (in module meg_qc.plotting.universal_plots) split_blended_freqs_at_the_lowest_point() (in module meg_qc.calculation.metrics.PSD_meg_qc) split_correlated_artifacts_into_3_groups() (in module meg_qc.calculation.metrics.ECG_EOG_meg_qc) STD_meg_qc() (in module meg_qc.calculation.metrics.STD_meg_qc) stim_data_to_df() (in module meg_qc.calculation.initial_meg_qc) subject (meg_qc.plotting.meg_qc_plots.Deriv_to_plot attribute) switch_names_on_off() (in module meg_qc.plotting.universal_plots)

T

to_df() (meg_qc.calculation.objects.MEG_channel method)

W

wave_shape (meg_qc.calculation.metrics.ECG_EOG_meg_qc.Avg_artif attribute)

wave_shape_smoothed (meg_qc.calculation.metrics.ECG_EOG_meg_qc.Avg_artif attribute)