MEG_QC API documentation¶
- Installation
- API documentation
- Pipeline Settings
- Default settings [DEFAULT]
- Filtering [Filtering]
- Epoching [Epoching]
- Standard deviation [STD]
- Power spectral density [PSD]
- Peak-to-peak amplitude manual [PTP_manual]
- Peak-to-peak amplitude auto (based on MNE annotatons) [PTP_auto]
- Heart beat artifacts [ECG]
- Eye movement artifacts [EOG]
- Head_movement artifacts [Head_movement]
- Muscle artifacts [Muscle]
- Internal Pipeline Settings
- Main
- Initial processing
- Standard deviation
- Frequency spectrum
PSD_meg_qc()
Plot_psd_old()
add_log_buttons()
assign_psds_to_channels()
cut_the_noise_from_psd()
find_noisy_freq_bands_complex()
find_noisy_freq_bands_simple()
find_number_and_ampl_of_noise_freqs()
get_ampl_of_brain_waves()
get_ampl_of_noisy_freqs()
get_mean_bands_amplitude()
get_nfft_nperseg()
make_dict_global_psd()
make_dict_local_psd()
make_simple_metric_psd()
plot_one_psd()
split_blended_freqs_at_the_lowest_point()
- Peak to peak amplitude manual
- Peak to peak amplitude auto: based on MNE annotations
- ECG and EOG
Avg_artif
ECG_meg_qc()
EOG_meg_qc()
align_mean_rwave()
assign_lobe_to_artifacts()
calculate_artifacts_on_channels()
check_3_conditions()
check_mean_wave()
detect_channels_above_norm()
detect_noisy_ecg()
estimate_t0()
find_affected_by_correlation()
find_affected_over_mean()
find_epoch_peaks()
find_mean_rwave_blink()
find_t0_channels()
find_t0_highest()
find_t0_mean()
flip_channels()
get_ECG_data_choose_method()
get_EOG_data()
make_dict_global_ECG_EOG()
make_simple_metric_ECG_EOG()
plot_affected_channels()
plot_artif_per_ch_correlated_lobes()
plot_correlation()
plot_ecg_eog_mne()
plot_mean_rwave_shifted()
shift_mean_wave()
split_correlated_artifacts_into_3_groups()
- Muscle artifacts
- Head movement artifacts
- Universal plotting functions
MEG_channels
Plot_psd_csv()
QC_derivative
add_log_buttons()
assign_channels_properties()
assign_epoched_std_ptp_to_channels()
boxplot_all_time()
boxplot_all_time_OLD()
boxplot_all_time_csv()
boxplot_epoched_xaxis_channels()
boxplot_epoched_xaxis_channels_csv()
boxplot_epoched_xaxis_epochs()
boxplot_epoched_xaxis_epochs_csv()
boxplot_epochs()
boxplot_epochs_old()
check_num_channels_correct()
figure_x_axis()
get_ch_color_knowing_name()
get_tit_and_unit()
make_3d_sensors_trace()
make_head_pos_plot_csv()
make_head_pos_plot_mne()
plot_ECG_EOG_channel()
plot_ECG_EOG_channel_csv()
plot_affected_channels_csv()
plot_artif_per_ch_correlated_lobes_csv()
plot_correlation_csv()
plot_df_of_channels_data_as_lines_by_lobe()
plot_df_of_channels_data_as_lines_by_lobe_OLD()
plot_df_of_channels_data_as_lines_by_lobe_csv()
plot_muscle_annotations_mne()
plot_muscle_csv()
plot_pie_chart_freq()
plot_pie_chart_freq_csv()
plot_sensors_3d()
plot_sensors_3d_csv()
plot_sensors_3d_separated()
plot_time_series()
plot_time_series_avg()
sort_channel_by_lobe()
split_correlated_artifacts_into_3_groups_csv()
switch_names_on_off()
- HTML report
- Pipeline Settings